ZZD Lab
Research Output

Publications

2 results found

* corresponding author · bold = first author

2026

AraVirusPPI: A protein language model-powered method for predicting Arabidopsis thaliana-virus protein-protein interactions

Shaoke Zhang, Jiajun Li, Mengdi Yuan, Linyang Jiang, Zhigang Li, Chunyang Wang, Wenyu Shi*, Ziding Zhang*

Plant Physiology, 2026.

DOI PDF

2025

PPEPFinder: A deep learning framework integrating sequence embeddings and structural graph representations for predicting fungal and oomycete effector proteins

Mengdi Yuan, Shaoke Zhang, Jiajun Li, Jingyan Zheng, Chenping Lei, Zhuojun Wang, Miao Zhao, Wenyu Shi*, Ziding Zhang*

The plant journal, 2025.

DOI PDF